Package: GillespieSSA2 0.3.0

GillespieSSA2: Gillespie's Stochastic Simulation Algorithm for Impatient People

A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2021) <doi:10.1038/s41467-021-24152-2>.

Authors:Robrecht Cannoodt [aut, cre], Wouter Saelens [aut]

GillespieSSA2_0.3.0.tar.gz
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GillespieSSA2_0.3.0.tgz(r-4.4-x86_64)GillespieSSA2_0.3.0.tgz(r-4.4-arm64)GillespieSSA2_0.3.0.tgz(r-4.3-x86_64)GillespieSSA2_0.3.0.tgz(r-4.3-arm64)
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GillespieSSA2.pdf |GillespieSSA2.html✨
GillespieSSA2/json (API)
NEWS

# Install 'GillespieSSA2' in R:

install.packages('GillespieSSA2', repos = c('https://rcannood.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rcannood/gillespiessa2/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

6.74 score 7 stars 1 packages 52 scripts 361 downloads 9 exports 41 dependencies

Last updated 2 years agofrom:adb5454390. Checks:OK: 9. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 07 2024
R-4.5-win-x86_64	OK	Nov 07 2024
R-4.5-linux-x86_64	OK	Nov 07 2024
R-4.4-win-x86_64	OK	Nov 07 2024
R-4.4-mac-x86_64	OK	Nov 07 2024
R-4.4-mac-aarch64	OK	Nov 07 2024
R-4.3-win-x86_64	OK	Nov 07 2024
R-4.3-mac-x86_64	OK	Nov 07 2024
R-4.3-mac-aarch64	OK	Nov 07 2024

Exports:compile_reactions ode_em plot_ssa port_reactions reaction ssa ssa_btl ssa_etl ssa_exact

Dependencies:assertthat bit bit64 cli clipr cpp11 crayon desc dplyr dynutils fansi generics glue hms lattice lifecycle magrittr Matrix pillar pkgconfig prettyunits progress proxyC purrr R6 Rcpp RcppArmadillo RcppXPtrUtils readr remotes rlang stringi stringr tibble tidyr tidyselect tzdb utf8 vctrs vroom withr

Converting from GillespieSSA to GillespieSSA2

Rendered fromconverting_from_GillespieSSA.Rmdusingknitr::rmarkdownon Nov 07 2024.

Last update: 2020-07-14
Started: 2019-08-09

Decaying-Dimerization Reaction Set

Rendered fromdecaying_dimer.Rmdusingknitr::rmarkdownon Nov 07 2024.

Last update: 2023-01-23
Started: 2019-07-17

Introduction to GillespieSSA2

Rendered froman_introduction.Rmdusingknitr::rmarkdownon Nov 07 2024.

Last update: 2020-07-14
Started: 2019-08-09