Package: GillespieSSA2 0.3.0

GillespieSSA2: Gillespie's Stochastic Simulation Algorithm for Impatient People

A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2021) <doi:10.1038/s41467-021-24152-2>.

Authors:Robrecht Cannoodt [aut, cre], Wouter Saelens [aut]

GillespieSSA2_0.3.0.tar.gz
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GillespieSSA2.pdf |GillespieSSA2.html✨
GillespieSSA2/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/rcannood/gillespiessa2/issues

On CRAN:

9 exports 7 stars 1.54 score 41 dependencies 1 dependents 52 scripts 432 downloads

Last updated 2 years agofrom:adb5454390. Checks:OK: 9. Indexed: yes.

Exports:compile_reactionsode_emplot_ssaport_reactionsreactionssassa_btlssa_etlssa_exact

Dependencies:assertthatbitbit64clicliprcpp11crayondescdplyrdynutilsfansigenericsgluehmslatticelifecyclemagrittrMatrixpillarpkgconfigprettyunitsprogressproxyCpurrrR6RcppRcppArmadilloRcppXPtrUtilsreadrremotesrlangstringistringrtibbletidyrtidyselecttzdbutf8vctrsvroomwithr