Demo with mtcarsUpdated 8 days ago

Robrecht Cannoodt

Rendered from mtcars.Rmd in funkyheatmap 0.6.0.
Recreating the scIB figuresUpdated 8 days ago

Robrecht Cannoodt

Rendered from scIB.Rmd in funkyheatmap 0.6.0.
Getting startedUpdated 3 months ago

Robrecht Cannoodt

Rendered from getting_started.Rmd in anndata 0.7.5.6.
Running SCORPIUS on an AnnData objectUpdated 1 years ago

Robrecht Cannoodt

Rendered from anndata.Rmd in SCORPIUS 1.0.9.
Running SCORPIUS on a SingleCellExperiment objectUpdated 1 years ago

Robrecht Cannoodt

Rendered from singlecellexperiment.Rmd in SCORPIUS 1.0.9.
Creating a TI method: ContainerUpdated 2 years ago

Wouter Saelens, Robrecht Cannoodt

Rendered from create_ti_method_container.Rmd in dynwrap 1.2.4.
Decaying-Dimerization Reaction SetUpdated 2 years ago

Robrecht Cannoodt

Rendered from decaying_dimer.Rmd in GillespieSSA2 0.3.0.
Kermack-McKendrick SIR modelUpdated 2 years ago

Robrecht Cannoodt

Rendered from sir.Rmd in GillespieSSA2 0.3.0.
Linear Chain SystemUpdated 2 years ago

Robrecht Cannoodt

Rendered from linear_chain.Rmd in GillespieSSA2 0.3.0.
Lotka Predator-Prey modelUpdated 2 years ago

Robrecht Cannoodt

Rendered from lotka_predator_prey.Rmd in GillespieSSA2 0.3.0.
Pearl-Verhulst Logistic Growth modelUpdated 2 years ago

Robrecht Cannoodt

Rendered from logistic_growth.Rmd in GillespieSSA2 0.3.0.
Radioactive Decay modelUpdated 2 years ago

Robrecht Cannoodt

Rendered from radioactive_decay.Rmd in GillespieSSA2 0.3.0.
Rosenzweig-MacArthur Predator-Prey modelUpdated 2 years ago

Robrecht Cannoodt

Rendered from rm_predator_prey.Rmd in GillespieSSA2 0.3.0.
SIRS metapopulation modelUpdated 2 years ago

Robrecht Cannoodt

Rendered from epi_chain.Rmd in GillespieSSA2 0.3.0.
Overview of the functionality provided by the dynutils packageUpdated 2 years ago

Robrecht Cannoodt & Wouter Saelens

Rendered from functionality.Rmd in dynutils 1.0.11.
Demo with scanpyUpdated 4 years ago

Robrecht Cannoodt

Rendered from scanpy_demo.Rmd in anndata 0.7.5.6.
Creating a TI method: RUpdated 4 years ago

Wouter Saelens, Robrecht Cannoodt

Rendered from create_ti_method_r.Rmd in dynwrap 1.2.4.
Creating a TI method: ScriptUpdated 4 years ago

Wouter Saelens, Robrecht Cannoodt

Rendered from create_ti_method_definition.Rmd in dynwrap 1.2.4.
Installation instructionsUpdated 4 years ago

Robrecht Cannoodt

Rendered from installation.html.asis in dyngen 1.0.5.
Getting startedUpdated 4 years ago

Robrecht Cannoodt

Rendered from getting_started.html.asis in dyngen 1.0.5.
Converting from GillespieSSA to GillespieSSA2Updated 4 years ago

Robrecht Cannoodt

Rendered from converting_from_GillespieSSA.Rmd in GillespieSSA2 0.3.0.
Introduction to GillespieSSA2Updated 4 years ago

Robrecht Cannoodt

Rendered from an_introduction.Rmd in GillespieSSA2 0.3.0.
Creating a TI method: Wrapping trajectoriesUpdated 5 years ago

Wouter Saelens, Robrecht Cannoodt

Rendered from create_ti_method_wrappers.Rmd in dynwrap 1.2.4.
Decaying-Dimerization Reaction Set (Gillespie, 2001)Updated 5 years ago

Robrecht Cannoodt

Rendered from decaying_dimer.Rmd in GillespieSSA 0.6.2.
Kermack-McKendrick SIR model (Brown & Rothery, 1993)Updated 5 years ago

Robrecht Cannoodt

Rendered from sir.Rmd in GillespieSSA 0.6.2.
Linear Chain System (Cao et al., 2004)Updated 5 years ago

Robrecht Cannoodt

Rendered from linear_chain.Rmd in GillespieSSA 0.6.2.
Lotka predator-prey model (Gillespie, 1977; Kot, 2001)Updated 5 years ago

Robrecht Cannoodt

Rendered from lotka_predator_prey.Rmd in GillespieSSA 0.6.2.
Pearl-Verhulst Logistic growth model (Kot, 2001)Updated 5 years ago

Robrecht Cannoodt

Rendered from logistic_growth.Rmd in GillespieSSA 0.6.2.
Radioactive decay model (Gillespie, 1977)Updated 5 years ago

Robrecht Cannoodt

Rendered from radioactive_decay.Rmd in GillespieSSA 0.6.2.
Rosenzweig-MacArthur predator-prey model (Pineda-Krch et al., 2007)Updated 5 years ago

Robrecht Cannoodt

Rendered from rm_predator_prey.Rmd in GillespieSSA 0.6.2.
SIRS metapopulation model (Pineda-Krch, 2008)Updated 5 years ago

Robrecht Cannoodt

Rendered from epi_chain.Rmd in GillespieSSA 0.6.2.
Investigating dendritic cell maturation in dendritic cell progenitorsUpdated 6 years ago

Robrecht Cannoodt

Rendered from ginhoux.Rmd in SCORPIUS 1.0.9.
Trajectory inference from simulated dataUpdated 6 years ago

Robrecht Cannoodt

Rendered from simulated-data.Rmd in SCORPIUS 1.0.9.