Package: GillespieSSA 0.6.2

GillespieSSA: Gillespie's Stochastic Simulation Algorithm (SSA)

Provides a simple to use, intuitive, and extensible interface to several stochastic simulation algorithms for generating simulated trajectories of finite population continuous-time model. Currently it implements Gillespie's exact stochastic simulation algorithm (Direct method) and several approximate methods (Explicit tau-leap, Binomial tau-leap, and Optimized tau-leap). The package also contains a library of template models that can be run as demo models and can easily be customized and extended. Currently the following models are included, 'Decaying-Dimerization' reaction set, linear chain system, logistic growth model, 'Lotka' predator-prey model, Rosenzweig-MacArthur predator-prey model, 'Kermack-McKendrick' SIR model, and a 'metapopulation' SIRS model. Pineda-Krch et al. (2008) <doi:10.18637/jss.v025.i12>.

Authors:Mario Pineda-Krch [aut], Robrecht Cannoodt [aut, cre]

GillespieSSA_0.6.2.tar.gz
GillespieSSA_0.6.2.zip(r-4.7)GillespieSSA_0.6.2.zip(r-4.6)GillespieSSA_0.6.2.zip(r-4.5)
GillespieSSA_0.6.2.tgz(r-4.6-any)GillespieSSA_0.6.2.tgz(r-4.5-any)
GillespieSSA_0.6.2.tar.gz(r-4.7-any)GillespieSSA_0.6.2.tar.gz(r-4.6-any)
GillespieSSA_0.6.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GillespieSSA/json (API)

# Install 'GillespieSSA' in R:
install.packages('GillespieSSA', repos = c('https://rcannood.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rcannood/gillespiessa/issues

On CRAN:

Conda:

7.49 score 3 stars 1 packages 123 scripts 367 downloads 7 mentions 6 exports 0 dependencies

Last updated from:b532ff9206. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK115
source / vignettesOK209
linux-release-x86_64OK144
macos-release-arm64OK109
macos-oldrel-arm64OK85
windows-develOK111
windows-releaseOK98
windows-oldrelOK70
wasm-releaseOK111

Exports:ssassa.btlssa.dssa.etlssa.otlssa.plot

Dependencies:

Decaying-Dimerization Reaction Set (Gillespie, 2001)
Rendered fromdecaying_dimer.Rmdusingknitr::rmarkdown

Last update: 2019-07-16
Started: 2019-07-13

Kermack-McKendrick SIR model (Brown & Rothery, 1993)
Rendered fromsir.Rmdusingknitr::rmarkdown

Last update: 2019-07-16
Started: 2019-07-13

Linear Chain System (Cao et al., 2004)
Rendered fromlinear_chain.Rmdusingknitr::rmarkdown

Last update: 2019-07-16
Started: 2019-07-13

Lotka predator-prey model (Gillespie, 1977; Kot, 2001)
Rendered fromlotka_predator_prey.Rmdusingknitr::rmarkdown

Last update: 2019-07-16
Started: 2019-07-13

Pearl-Verhulst Logistic growth model (Kot, 2001)
Rendered fromlogistic_growth.Rmdusingknitr::rmarkdown

Last update: 2019-07-16
Started: 2019-07-13

Radioactive decay model (Gillespie, 1977)
Rendered fromradioactive_decay.Rmdusingknitr::rmarkdown

Last update: 2019-07-16
Started: 2019-07-13

Rosenzweig-MacArthur predator-prey model (Pineda-Krch et al., 2007)
Rendered fromrm_predator_prey.Rmdusingknitr::rmarkdown

Last update: 2019-07-16
Started: 2019-07-13

SIRS metapopulation model (Pineda-Krch, 2008)
Rendered fromepi_chain.Rmdusingknitr::rmarkdown

Last update: 2019-07-16
Started: 2019-07-13