Package: qsub 1.1.3

qsub: Running Commands Remotely on 'Gridengine' Clusters

Run lapply() calls in parallel by submitting them to 'gridengine' clusters using the 'qsub' command.

Authors:Robrecht Cannoodt [aut, cre], Wouter Saelens [aut]

qsub_1.1.3.tar.gz
qsub_1.1.3.zip(r-4.5)qsub_1.1.3.zip(r-4.4)qsub_1.1.3.zip(r-4.3)
qsub_1.1.3.tgz(r-4.5-any)qsub_1.1.3.tgz(r-4.4-any)qsub_1.1.3.tgz(r-4.3-any)
qsub_1.1.3.tar.gz(r-4.5-noble)qsub_1.1.3.tar.gz(r-4.4-noble)
qsub_1.1.3.tgz(r-4.4-emscripten)qsub_1.1.3.tgz(r-4.3-emscripten)
qsub.pdf |qsub.html✨
qsub/json (API)
NEWS

# Install 'qsub' in R:
install.packages('qsub', repos = c('https://rcannood.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rcannood/qsub/issues

On CRAN:

Conda:

5.07 score 9 stars 37 scripts 284 downloads 7 mentions 24 exports 42 dependencies

Last updated 3 years agofrom:7e22c7242f. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 22 2025
R-4.5-winOKFeb 22 2025
R-4.5-macOKFeb 22 2025
R-4.5-linuxOKFeb 22 2025
R-4.4-winOKFeb 22 2025
R-4.4-macOKFeb 22 2025
R-4.3-winOKFeb 22 2025
R-4.3-macOKFeb 22 2025

Exports:cat_remotecp_remotecreate_qsub_configfile_exists_remoteget_default_qsub_configis_job_runningis_qsub_configls_remotemkdir_remoteoverride_qsub_configqacctqacct_remoteqstat_jqstat_j_remoteqstat_remoteqsub_lapplyqsub_retrieveqsub_runrm_remotersync_remoterun_remoteset_default_qsub_configtest_qsub_configwrite_remote

Dependencies:askpassbitbit64clicliprcpp11crayoncredentialscurldplyrfansigenericsgluehmsjsonlitelifecyclemagrittropensslpbapplypillarpkgconfigprettyunitsprocessxprogresspspurrrR6randomreadrrlangsshstringistringrsystibbletidyrtidyselecttzdbutf8vctrsvroomwithr

Readme and manuals

Help Manual

Help pageTopics
Read from a file remotelycat_remote
A wrapper around the scp shell command that handles local/remote files and allows copying between remote hosts via the local machine.cp_remote
Create a qsub configuration object.create_qsub_config override_qsub_config
Create an SSH connection with remotecreate_ssh_connection
Checks if a local or remote file exists.file_exists_remote
Retrieve a default qsub_config.get_default_qsub_config
Create an instance of the qsub_config.instantiate_qsub_config
Check whether a job is running.is_job_running
Returns whether the passed object is a qsub_config object.is_qsub_config
Tests whether the remote is a local host or not.is_remote_local
View the contents of a directory remotelyls_remote
Creates a remote directory with the specified group ownership and permissions.mkdir_remote
Run qacct on remoteqacct
Run qacct on remoteqacct_remote
Run qstat on remoteqstat_j
Run qstat on remoteqstat_j_remote
Show the status of Grid Engine jobs and queuesqstat_remote
Running Commands Remotely on Gridengine Clustersqsub
Apply a Function over a List or Vector on a gridengine system!qsub_lapply
Retrieve the results of a qsub execution.qsub_retrieve
Run a Function on a gridengine system!qsub_run
Remove a file or folderrm_remote
Rsync files between machinesrsync_remote
'run_remote' - Runs the command locally or remotely using ssh.run_remote
Set a default qsub_config.set_default_qsub_config
Tests whether the passed object is a qsub_config object.test_qsub_config
Write to a file remotelywrite_remote